Genome Project¶
The plan is to store the genome assembly as collection of analysis records (one for each program ran to create the assembly) grouped together by this project.
Warning
Not yet available as a Tripal3 content type.
Overview¶
Open by Default
Publication (prominent) with link
Meta-data about the assembly
- Scaffolds: size + number
- Contigs: size + number
- Scaffold N50/L50
- Contig N50/L50
Meta-data about the annotation
Assembly Details¶
How was the assembly generated?
- paragraph description
- a list of all the analysis’ records with versions, etc.
How was it annotated?
- paragraph description
- a list of all the analysis’ records with versions, etc.
Contacts¶
- List of contacts for who will answer questions
Whole Genome Browsing¶
Open by Default
Genome Browser
- summarize the data in the current JBrowse
- have an image linking to the JBrowse instance for this assembly
Whole-Genome Diagram
- show an embedded CViTjs diagram summarizing this assembly’s annotation and markers.
BLAST Search¶
- BLAST quick search where database is this assembly
Bulk Data¶
- Files for download associated with this genome